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I removed the SHORT Pin (#8) inside the Engine Room Junction Block thinking it was a burnt 30 Amp fuse. It was not! Don't do it! It is a tad bit wider and opaque yellow in color.
I have found no other post regarding this SHORT Pin. I can't say exactly if some of my issues resulted from removing and replacing this jumper since I pulled other fuses and a couple relays too.
The issues I am having and there might be more later when my wife brings the car home are the GPS reset and the Auto Door Lock seamed to have reset too. My wife also said the lamps that usually light when she uses her key FOB to lock and unlock the door are different. What that means I don't know but will clarify when I do.
Automatic Air Conditioning
Automatic Light Control
Combination Meter
Headlight
Interior Light
Key Reminder and Seat Belt Warning
Light Auto Turn Off
Multiplex Communication System
Power Window
Theft Deterrent and Door Lock Control
Wireless Door Lock Control
Some of the stuff you mentioned fall under that.